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Dynamic Exploratory Data Analysis with Streamlit
The Dynamic Exploratory Data Analysis app simplifies EDA for users of all skill levels by allowing CSV uploads and generating insightful visualizations. Developed with Streamlit, it automates data type detection and offers various analysis modules. Key features include univariate, bivariate,…
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Dynamic Shiny Dashboard for the Visualization of DESeq2 Results
The project developed an interactive Dynamic Shiny Dashboard to visualize DESeq2 differential expression results, allowing users to explore data without R programming skills. It features various visualizations such as volcano plots and heatmaps, facilitating effective communication of results while supporting…
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Gene Set Enrichment and KEGG Pathway Analysis Using ClusterProfiler
The project utilized KEGG-based gene set enrichment analysis from DESeq2 results to visualize biological pathway alterations in Alzheimer’s disease. Using R and ClusterProfiler, enriched pathways were identified and visualized, revealing significant immune and neurodegenerative responses. The findings could inform future…
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Differential Gene Expression Analysis in Alzheimer’s Disease
This project conducts differential gene expression analysis on Alzheimer’s disease using RNA-Seq data from the GSE53697 dataset, identifying differentially expressed genes (DEGs) via DESeq2 in R. It emphasizes preprocessing, outlier removal, and visualization through a Shiny app, facilitating interactive exploration…
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Wrapping Bioinformatics Tools into a User-Friendly Web Platform
The project aimed to simplify access to complex bioinformatics tools by creating a user-friendly web platform for Bioinfopipe Ltd. Over four months, over 300 tools were wrapped into intuitive interfaces, enhancing usability for non-technical users. The project resulted in comprehensive…
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BIOPRED: A Machine Learning-Based Web Application for Accurate Bioactivity Prediction, Drug Repurposing, and Molecular Docking
BIOPRED is a machine learning-driven web application developed for predicting drug-target interactions and supporting molecular docking. Utilizing ChEMBL data, it employs various algorithms for both regression and classification tasks with high accuracy. The user-friendly platform enables researchers to input SMILES…
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