Category: Bioinformatics Workflows, Pipelines and Tools

Benchmarking Germline and Somatic Variant Calling Pipelines Using CoSAP and Galaxy

Jun 5, 2025

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by

Cyrille Njume

in Bioinformatics Data Analytics, Bioinformatics Workflows, Pipelines and Tools, Omics & Multi-Omics Analysis, Projects

Benchmarking Germline and Somatic Variant Calling Pipelines Using CoSAP and Galaxy A Comparative Study with 9 Pipelines on Real Exome Data Abstract This project evaluated nine variant calling pipelines using whole exome sequencing (WES) data. It involved combinations of two mappers (BWA, Bowtie2) and four variant callers (DeepVariant, HaplotypeCaller, Strelka, SomaticSniper) across both germline and…
Wrapping Bioinformatics Tools into a User-Friendly Web Platform

Nov 16, 2023

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by

Cyrille Njume

in Bioinformatics Workflows, Pipelines and Tools, Projects

The project aimed to simplify access to complex bioinformatics tools by creating a user-friendly web platform for Bioinfopipe Ltd. Over four months, over 300 tools were wrapped into intuitive interfaces, enhancing usability for non-technical users. The project resulted in comprehensive documentation and a scalable solution on AWS, democratizing bioinformatics.