Category: Omics & Multi-Omics Analysis

Benchmarking Germline and Somatic Variant Calling Pipelines Using CoSAP and Galaxy

Jun 5, 2025

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by

Cyrille Njume

in Bioinformatics Data Analytics, Bioinformatics Workflows, Pipelines and Tools, Omics & Multi-Omics Analysis, Projects

Benchmarking Germline and Somatic Variant Calling Pipelines Using CoSAP and Galaxy A Comparative Study with 9 Pipelines on Real Exome Data Abstract This project evaluated nine variant calling pipelines using whole exome sequencing (WES) data. It involved combinations of two mappers (BWA, Bowtie2) and four variant callers (DeepVariant, HaplotypeCaller, Strelka, SomaticSniper) across both germline and…